A Trans-Dimensional Approach to the Behavioral Aspects of Depression methods
Aim. Evidence-backed execution summary for A Trans-Dimensional Approach to the Behavioral Aspects of Depression methods from A Trans-Dimensional Approach to the Behavioral Aspects of Depression.
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rat
Subject model for the experiment.
- Use
- confirm full cohort details in the source paper
Sucrose consumption test
reagent used in the protocol.
- Use
- Anhedonia was assessed weekly during exposure to uCMS using the SCT. Briefly, animals were allowed to habituate to the sucrose solution for 1 week before the uCMS protocol to establish baseline preference levels. To test sucrose preference, animals that were food- and water-deprived for 18 h were presented with two...
Novelty suppressed feeding
Anxiety-like behavior was also assessed using the NSF paradigm. Following published protocols (Bodnoff et al., ), animals were food-deprived for 23 h before being placed in a novel environment for 10 min (an open-field arena; MedAssociates Inc) where a single food pellet was centrally placed. Upon reachi...
- Use
- Anxiety-like behavior was also assessed using the NSF paradigm. Following published protocols (Bodnoff et al., ), animals were food-deprived for 23 h before being placed in a novel environment for 10 min (an open-field arena; MedAssociates Inc) where a single food pellet was centrally placed. Upon reachi...
Elevated-plus maze
The EPM was used to test anxiety-like behavior. The EPM apparatus was made of black polypropylene (ENV-560; MedAssociates), consisted of two opposite open arms (50.8 × 10.2 cm) and two enclosed arms (50.8 × 10.2 × 40.6 cm) elevated 72.4 cm above th...
- Use
- The EPM was used to test anxiety-like behavior. The EPM apparatus was made of black polypropylene (ENV-560; MedAssociates), consisted of two opposite open arms (50.8 × 10.2 cm) and two enclosed arms (50.8 × 10.2 × 40.6 cm) elevated 72.4 cm above th...
Forced swimming test
Learned helplessness was evaluated in the FST on the last day of exposure to uCMS. Twenty-four hours after a pre-test session (10 min), rats were placed in cylinders filled with water (25°C; depth 30 cm) for a period of 5 min. Test sessions were assessed using a camera connected to a video tra...
- Use
- Learned helplessness was evaluated in the FST on the last day of exposure to uCMS. Twenty-four hours after a pre-test session (10 min), rats were placed in cylinders filled with water (25°C; depth 30 cm) for a period of 5 min. Test sessions were assessed using a camera connected to a video tra...
Morris water maze
An evaluation of cognitive function was performed in a spatial learning task (hippocampal-dependent) and a reverse learning task (prefrontal cortex-dependent) in the MWM (Cerqueira et al., ). The MWM apparatus consisted of a black tank (diameter: 170 cm; depth: 50 cm), divided in quadrants by imaginary lines, and fi...
- Use
- An evaluation of cognitive function was performed in a spatial learning task (hippocampal-dependent) and a reverse learning task (prefrontal cortex-dependent) in the MWM (Cerqueira et al., ). The MWM apparatus consisted of a black tank (diameter: 170 cm; depth: 50 cm), divided in quadrants by imaginary lines, and fi...
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Novelty suppressed feeding
Anxiety-like behavior was also assessed using the NSF paradigm. Following published protocols (Bodnoff et al., ), animals were food-deprived for 23 h before being placed in a novel environment for 10 min (an open-field arena; MedAssociates Inc) where a single food pellet was centrally placed. Upon reaching the pellet, animals were returned to their home cages where they were presented with pre-weighed food over a period of 5 min. Latency to feeding in the open field was used as an index of anxiety-like behavior; the amount of food consumed in the home cage provided a measure of appetitive drive.
Sucrose consumption test
Anhedonia was assessed weekly during exposure to uCMS using the SCT. Briefly, animals were allowed to habituate to the sucrose solution for 1 week before the uCMS protocol to establish baseline preference levels. To test sucrose preference, animals that were food- and water-deprived for 18 h were presented with two pre-weighed bottles containing 1% sucrose solution or tap water for a period of 1 h. Sucrose preference was calculated according to the formula: sucrose preference = [sucrose intake/(sucrose intake + water intake)] × 100, as previously described (Bekris et al., ). Anhedonia was defined as a reduction in sucrose preference relative to baseline levels.
Elevated-plus maze
The EPM was used to test anxiety-like behavior. The EPM apparatus was made of black polypropylene (ENV-560; MedAssociates), consisted of two opposite open arms (50.8 × 10.2 cm) and two enclosed arms (50.8 × 10.2 × 40.6 cm) elevated 72.4 cm above the floor. The junction area between the four arms measured 10 × 10 cm. A raised edge (0.5 cm) on the open arms provided additional grip for the rats. Rats were placed individually in the center of the maze facing a closed arm and were allowed 5 min of free exploration. Behavioral parameters were recorded with the use of an infra-red photobeam system connected to a computer with specific software (MedPCIV, MedAssociates). After each trial, the maze was cleaned with 10% ethanol. The time spent in the open arms was used to calculate the percen...
Morris water maze
An evaluation of cognitive function was performed in a spatial learning task (hippocampal-dependent) and a reverse learning task (prefrontal cortex-dependent) in the MWM (Cerqueira et al., ). The MWM apparatus consisted of a black tank (diameter: 170 cm; depth: 50 cm), divided in quadrants by imaginary lines, and filled with water (22°C) to a depth of 31 cm. During testing, a black platform (12 × 12 cm; invisible to the rats) was placed at a height of 30 cm. The room was dimly lit and extrinsic visual clues were glued to the walls. Data were collected using a video-tracking system (Viewpoint). In the spatial learning task, animals were tested for three consecutive days (four trials per day, with a maximum of 2 min per trial). The escape platform was placed in the centre of an arbitrarily-defined quadrant, assigned to a specific test subject. To avoid possible bias effects du...
Drugs
The antidepressant drugs used were fluoxetine (10 mg/kg, Kemprotec) and imipramine (10 mg/kg, Sigma-Aldrich). Compounds were dissolved in 5% DMSO in 0.9% saline. Fluoxetine, imipramine and vehicle (0.9% saline) were administered intraperitoneally (1 ml/kg) during the last 2 weeks of the uCMS protocol. All injections were performed at 20:00. The doses of antidepressant drugs administered daily were chosen based in their therapeutic effects in previous studies (Song et al., ).
Statistical analysis
After confirmation of homogeneity, appropriate statistical tests were applied to the data. Repeated measures ANOVA was used to analyze the results of the sucrose preference test and of the spatial learning task in the MWM. One-way ANOVA was used to evaluate the impact of uCMS and antidepressant treatment in the EPM, NSF, FST and reverse learning task in the MWM. Differences between groups were determined by post-hoc analysis, using Tukey's honestly significant difference test (Tukey HSD). Correlations between the different behavioral parameters were evaluated by the Pearson coefficient ( r ) test in which data from control and uCMS groups was included. Statistical significance was accepted for P < 0.05. Results are expressed as mean ± s.e.m.
Measurement outputs
What raw and processed outputs should exist?
Inter-domain correlations between mood, anxiety and cognition. (A) Table shows Pearson correlation coefficients between different behavioral parameters and (B) graphical repres...
- Raw artifact
- Per-sample or per-animal endpoint measurements collected during the experiment
- Processed artifact
- Structured table with cleaned measurements ready for comparison
- Reported as
- Summary statistics and between-group or across-timepoint comparisons
Anxiety-like behavior was also assessed using the NSF paradigm. Following published protocols (Bodnoff et al., ), animals were food-deprived for 23 h before being placed i...
- Raw artifact
- Per-sample or per-animal endpoint measurements collected during the experiment
- Processed artifact
- Structured table with cleaned measurements ready for comparison
- Reported as
- Summary statistics and between-group or across-timepoint comparisons
The EPM was used to test anxiety-like behavior. The EPM apparatus was made of black polypropylene (ENV-560; MedAssociates), consisted of two opposite open arms (50.8 ×...
- Raw artifact
- Per-sample or per-animal endpoint measurements collected during the experiment
- Processed artifact
- Structured table with cleaned measurements ready for comparison
- Reported as
- Summary statistics and between-group or across-timepoint comparisons
Learned helplessness was evaluated in the FST on the last day of exposure to uCMS. Twenty-four hours after a pre-test session (10 min), rats were placed in cylinders fille...
- Raw artifact
- Per-sample or per-animal endpoint measurements collected during the experiment
- Processed artifact
- Structured table with cleaned measurements ready for comparison
- Reported as
- Summary statistics and between-group or across-timepoint comparisons
Analysis plan
How should the outputs become interpretable results?
Acquisition
Collect raw experimental outputs with enough metadata to preserve sample identity, condition, and timing.
inferred from protocolPreprocessing / cleaning
After confirmation of homogeneity, appropriate statistical tests were applied to the data.
from paperScoring or quantification
Quantify the primary readouts for this experiment: Inter-domain correlations between mood, anxiety and cognition. (A) Table shows Pearson correlation coefficients between different behavioral parameters and (B) graphical repres...; Anxiety-like behavior was also assessed using the NSF paradigm. Following published protocols (Bodnoff et al., ), animals were food-deprived for 23 h before being placed i...; The EPM was used to test anxiety-like behavior. The EPM apparatus was made of black polypropylene (ENV-560; MedAssociates), consisted of two opposite open arms (50.8 ×...; Learned helplessness was evaluated in the FST on the last day of exposure to uCMS. Twenty-four hours after a pre-test session (10 min), rats were placed in cylinders fille....
from paperStatistical comparison
After confirmation of homogeneity, appropriate statistical tests were applied to the data. Repeated measures ANOVA was used to analyze the results of the sucrose preference test...; Intra-domain correlation analysis revealed a negative correlation between sucrose preference and immobility time in the FST ( r = -0.751 (26), P <̴...; Correlation analysis was also performed to inspect for synergistic inter-domain effects as represented in Figure. Analyzing the interactions between mood and anxiety revealed a...
from paperReporting output
Report representative outputs alongside summary comparisons for Inter-domain correlations between mood, anxiety and cognition. (A) Table shows Pearson correlation coefficients between different behavioral parameters and (B) graphical repres..., Anxiety-like behavior was also assessed using the NSF paradigm. Following published protocols (Bodnoff et al., ), animals were food-deprived for 23 h before being placed i..., The EPM was used to test anxiety-like behavior. The EPM apparatus was made of black polypropylene (ENV-560; MedAssociates), consisted of two opposite open arms (50.8 ×..., Learned helplessness was evaluated in the FST on the last day of exposure to uCMS. Twenty-four hours after a pre-test session (10 min), rats were placed in cylinders fille....
inferred from protocolStructured statistical methods
After confirmation of homogeneity, appropriate statistical tests were applied to the data. Repeated measures ANOVA was used to analyze the results of the sucrose preference test...; Intra-domain correlation analysis revealed a negative correlation between sucrose preference and immobility time in the FST ( r = -0.751 (26), P <̴...; Correlation analysis was also performed to inspect for synergistic inter-domain effects as represented in Figure. Analyzing the interactions between mood and anxiety revealed a...
source structuredSource and audit
What supports the facts on this page?
Evidence quotes (6)
Anxiety-like behavior was also assessed using the NSF paradigm. Following published protocols (Bodnoff et al., ), animals were food-deprived for 23 h before being placed in a novel environment for 10 min (an open-field arena; MedAssociates Inc) where a single food pellet was centrally placed. Upon reaching the pellet, animals were returned to their home cages where they were presented with pre-weighed food over a period of 5 min. Latency to feeding in the open field was used as an index of anxiety-like behavior; the amount of food consumed in the home cage provided a measure of appetitive drive.
Anhedonia was assessed weekly during exposure to uCMS using the SCT. Briefly, animals were allowed to habituate to the sucrose solution for 1 week before the uCMS protocol to establish baseline preference levels. To test sucrose preference, animals that were food- and water-deprived for 18 h were presented with two pre-weighed bottles containing 1% sucrose solution or tap water for a period of 1 h. Sucrose preference was calculated according to the formula: sucrose preference = [sucrose intake/(sucrose intake + water intake)] × 100, as previously described (Bekris et al., ). Anhedonia was defined as a reduction in sucrose preference relative to baseline levels.
The EPM was used to test anxiety-like behavior. The EPM apparatus was made of black polypropylene (ENV-560; MedAssociates), consisted of two opposite open arms (50.8 × 10.2 cm) and two enclosed arms (50.8 × 10.2 × 40.6 cm) elevated 72.4 cm above the floor. The junction area between the four arms measured 10 × 10 cm. A raised edge (0.5 cm) on the open arms provided additional grip for the rats. Rats were placed individually in the center of the maze facing a closed arm and were allowed 5 min of free exploration. Behavioral parameters were recorded with the use of an infra-red photobeam system connected to a computer with specific software (MedPCIV, MedAssociates). After each trial, the maze was cleaned with 10% ethanol. The time spent in the open arms was used to calculate the percentage of time in the open arms which was taken as an index of anxiety-like behavior. The total number of entries in the closed arms was used as a measure of general locomotor activity.
An evaluation of cognitive function was performed in a spatial learning task (hippocampal-dependent) and a reverse learning task (prefrontal cortex-dependent) in the MWM (Cerqueira et al., ). The MWM apparatus consisted of a black tank (diameter: 170 cm; depth: 50 cm), divided in quadrants by imaginary lines, and filled with water (22°C) to a depth of 31 cm. During testing, a black platform (12 × 12 cm; invisible to the rats) was placed at a height of 30 cm. The room was dimly lit and extrinsic visual clues were glued to the walls. Data were collected using a video-tracking system (Viewpoint). In the spatial learning task, animals were tested for three consecutive days (four trials per day, with a maximum of 2 min per trial). The escape platform was placed in the centre of an arbitrarily-defined quadrant, assigned to a specific test subject. To avoid possible bias effects due to geographic preference, "animal-platform position" was paired between the different treatment groups. Test sessions begun with rats being placed, facing the wall of the maze, in a defined start position and finished once the escape platform had been reached. This procedure was contin...
The antidepressant drugs used were fluoxetine (10 mg/kg, Kemprotec) and imipramine (10 mg/kg, Sigma-Aldrich). Compounds were dissolved in 5% DMSO in 0.9% saline. Fluoxetine, imipramine and vehicle (0.9% saline) were administered intraperitoneally (1 ml/kg) during the last 2 weeks of the uCMS protocol. All injections were performed at 20:00. The doses of antidepressant drugs administered daily were chosen based in their therapeutic effects in previous studies (Song et al., ).
After confirmation of homogeneity, appropriate statistical tests were applied to the data. Repeated measures ANOVA was used to analyze the results of the sucrose preference test and of the spatial learning task in the MWM. One-way ANOVA was used to evaluate the impact of uCMS and antidepressant treatment in the EPM, NSF, FST and reverse learning task in the MWM. Differences between groups were determined by post-hoc analysis, using Tukey's honestly significant difference test (Tukey HSD). Correlations between the different behavioral parameters were evaluated by the Pearson coefficient ( r ) test in which data from control and uCMS groups was included. Statistical significance was accepted for P < 0.05. Results are expressed as mean ± s.e.m.
Machine-readable layer
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