Source Paper
J.-B. Kim, J. Sig Choi, Y.-M. Yu, K. Nam, C.-S. Piao et al.
Journal of Neuroscience • 2006
Cerebral ischemic injury proceeds with excitotoxicity-induced acute neuronal death in the ischemic core and with delayed damage processes in the penumbra. However, knowledge concerning the direct mediators that connect these two processes is limited. Here, we demonstrate that high-mobility group box 1 (HMGB1), a nonhistone DNA-binding protein, is massively released into the extracellular space immediately after ischemic insult and that it subsequently induces neuroinflammation in the postischemic brain. Short hairpin (sh)RNA-mediated HMGB1 downregulation in the postischemic brain suppressed infarct size, microglia activation, and proinflammatory marker induction, indicating that HMGB1 plays a crucial role in the inflammatory process. The proinflammatory cytokine-like function of extracellular HMGB1 was further verified in primary cortical cultures and microglial cultures. HMGB1 was found to accumulate in NMDA-treated primary cortical culture media, and supernatants collected from these cultures were found to trigger microglia activation, the hallmark of brain inflammation. Moreover, treatment with recombinant HMGB1 also induced microglial activation, but HMGB1-depleted supernatant produced by anti-HMGB1 antibody treatment or by HMGB1 shRNA expression did not, thus demonstrating the essential role of HMGB1 in microglial activation. Together, these results indicate that HMGB1 functions as a novel proinflammatory cytokine-like factor that connects excitotoxicity-induced acute damage processes and delayed inflammatory processes in the postischemic brain.
Objective: Induce cerebral ischemic injury and measure infarct size in the postischemic brain using Middle Cerebral Artery Occlusion (MCAO) model
This is a Middle Cerebral Artery Occlusion (MCAO) protocol using Not explicitly stated in provided text as the model organism. The procedure involves 10 procedural steps, 1 equipment items, 5 materials. Extracted from a 2006 paper published in Journal of Neuroscience.
Model and subjects
Not explicitly stated in provided text • Not explicitly stated in provided text • unknown • Not explicitly stated in provided text • Not explicitly stated in provided text
Study window
Estimated timing pending
Core workflow
MCAO Surgery • Monitor HMGB1 Release • HMGB1 Downregulation
Primary readouts
Key equipment and reagents
Verified items
0
Direct vendor links
0
Use this page as an execution guide, then fall back to the source paper whenever you need exact exclusions, dosing details, or assay-specific caveats.
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Start here. The step list is optimized for running the experiment, with direct vendor links available inline when you need to source a cited item.
Perform Middle Cerebral Artery Occlusion to induce cerebral ischemic injury in the brain
Note: This creates the ischemic core with excitotoxicity-induced acute neuronal death
“Cerebral ischemic injury proceeds with excitotoxicity-induced acute neuronal death in the ischemic core”
Assess massive release of HMGB1 into extracellular space immediately after ischemic insult
Note: HMGB1 is a nonhistone DNA-binding protein released as a result of ischemic injury
“High-mobility group box 1 (HMGB1), a nonhistone DNA-binding protein, is massively released into the extracellular space immediately after ischemic insult”
Apply short hairpin (sh)RNA-mediated HMGB1 downregulation in the postischemic brain
Note: This intervention suppresses infarct size, microglia activation, and proinflammatory marker induction
“Short hairpin (sh)RNA-mediated HMGB1 downregulation in the postischemic brain suppressed infarct size, microglia activation, and proinflammatory marker induction”
Quantify the size of the ischemic infarct in the postischemic brain tissue
Note: Infarct size is a primary outcome measure of MCAO severity
“Measure infarct size in the postischemic brain”
Evaluate microglia activation as a marker of brain inflammation in the postischemic brain
Note: Microglia activation is the hallmark of brain inflammation
“Supernatants collected from these cultures were found to trigger microglia activation, the hallmark of brain inflammation”
Quantify proinflammatory marker induction in the postischemic brain tissue
Note: Proinflammatory markers indicate the extent of neuroinflammation
“Short hairpin (sh)RNA-mediated HMGB1 downregulation in the postischemic brain suppressed infarct size, microglia activation, and proinflammatory marker induction”
Treat primary cortical cultures with NMDA to induce excitotoxicity and measure HMGB1 accumulation in culture media
Note: This verifies the proinflammatory cytokine-like function of extracellular HMGB1
“HMGB1 was found to accumulate in NMDA-treated primary cortical culture media”
Collect supernatants from NMDA-treated cortical cultures and apply to microglial cultures to assess activation
Note: Supernatants trigger microglia activation through HMGB1-dependent mechanisms
“Supernatants collected from these cultures were found to trigger microglia activation, the hallmark of brain inflammation”
Treat microglial cultures with recombinant HMGB1 to directly assess its role in microglial activation
Note: Direct treatment confirms HMGB1's essential role in microglial activation
“Treatment with recombinant HMGB1 also induced microglial activation”
Treat culture supernatants with anti-HMGB1 antibody or use HMGB1 shRNA expression to deplete HMGB1
Note: HMGB1-depleted supernatants do not trigger microglial activation, confirming HMGB1's essential role
“HMGB1-depleted supernatant produced by anti-HMGB1 antibody treatment or by HMGB1 shRNA expression did not trigger microglial activation”
This section explains what the experiment is doing, which readouts matter, what the data artifacts usually look like, and how the analysis should flow from raw capture to reported result.
Induce cerebral ischemic injury and measure infarct size in the postischemic brain using Middle Cerebral Artery Occlusion (MCAO) model
Objective
Induce cerebral ischemic injury and measure infarct size in the postischemic brain using Middle Cerebral Artery Occlusion (MCAO) model
Subjects
From paperNot explicitly stated in provided text • Not explicitly stated in provided text • unknown • Not explicitly stated in provided text • Not explicitly stated in provided text
Cohort notes
From paperThe study involved postischemic brain tissue analysis and primary cortical cultures
MCAO Surgery (Not specified)
Monitor HMGB1 Release (Immediately after ischemic insult)
HMGB1 Downregulation (Not specified)
Measure Infarct Size (Not specified)
Infarct size in postischemic brain
From paperNot explicitly stated in provided text
Artifact type
Endpoint measurements summarized by group or timepoint
Comparison focus
Compare endpoint magnitude between groups, timepoints, or both
Microglia activation status
From paperNot explicitly stated in provided text
Artifact type
Endpoint measurements summarized by group or timepoint
Comparison focus
Compare endpoint magnitude between groups, timepoints, or both
Proinflammatory marker induction levels
From paperNot explicitly stated in provided text
Artifact type
Endpoint measurements summarized by group or timepoint
Comparison focus
Compare endpoint magnitude between groups, timepoints, or both
HMGB1 release into extracellular space
From paperNot explicitly stated in provided text
Artifact type
Endpoint measurements summarized by group or timepoint
Comparison focus
Compare endpoint magnitude between groups, timepoints, or both
Infarct size in postischemic brain
From paperRaw artifact
Per-sample or per-animal endpoint measurements collected during the experiment
Processed artifact
Structured table with cleaned measurements ready for comparison
Final reported form
Summary statistics and between-group or across-timepoint comparisons
Microglia activation status
From paperRaw artifact
Per-sample or per-animal endpoint measurements collected during the experiment
Processed artifact
Structured table with cleaned measurements ready for comparison
Final reported form
Summary statistics and between-group or across-timepoint comparisons
Proinflammatory marker induction levels
From paperRaw artifact
Per-sample or per-animal endpoint measurements collected during the experiment
Processed artifact
Structured table with cleaned measurements ready for comparison
Final reported form
Summary statistics and between-group or across-timepoint comparisons
HMGB1 release into extracellular space
From paperRaw artifact
Per-sample or per-animal endpoint measurements collected during the experiment
Processed artifact
Structured table with cleaned measurements ready for comparison
Final reported form
Summary statistics and between-group or across-timepoint comparisons
Acquisition
Collect raw experimental outputs with enough metadata to preserve sample identity, condition, and timing.
Preprocessing / cleaning
Not explicitly stated in provided text
Scoring or quantification
Quantify the primary readouts for this experiment: Infarct size in postischemic brain; Microglia activation status; Proinflammatory marker induction levels; HMGB1 release into extracellular space.
Statistical comparison
Statistical method not yet structured for this page.
Reporting output
Report representative outputs alongside summary comparisons for Infarct size in postischemic brain, Microglia activation status, Proinflammatory marker induction levels, HMGB1 release into extracellular space.
Source links and direct wording from the methods section for validation and deeper review.
Citation
J.-B. Kim et al. (2006). HMGB1, a Novel Cytokine-Like Mediator Linking Acute Neuronal Death and Delayed Neuroinflammation in the Postischemic Brain. Journal of Neuroscience
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