Systemic Inflammation Induces Acute Behavioral and Cognitive Changes and Accelerates Neurodegenerative Disease methods
Aim. Evidence-backed execution summary for Systemic Inflammation Induces Acute Behavioral and Cognitive Changes and Accelerates Neurodegenerative Disease methods from Systemic Inflammation Induces Acute Behavioral and Cognitive Changes and Accelerates Neurodegenerative Disease.
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This experiment, in seven questions
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Shopping and prep list
What do I need before I start?
mouse
Subject model for the experiment.
- Use
- confirm full cohort details in the source paper
Quantitative PCR
reagent used in the protocol.
- Use
- Animals were terminally anesthetized and transcardially perfused with heparinized saline 2 hours postadministration of LPS or saline. Brains were rapidly removed and the hippocampi were dissected out, snap frozen in liquid nitrogen, and stored at -80°C. Total RNA was extracted using Qiagen RNeasy mini col...
Immunohistochemistry
reagent used in the protocol.
- Use
- Immunohistochemistry for cyclooxygenase-2 (COX-2) and IL-1β was carried out on formalin-fixed, paraffin-embedded sections. Sections were dewaxed, rehydrated, quenched with 1% hydrogen peroxide (H 2 O 2 ) in absolute methanol, and washed briefly in phosphate buffered saline (PBS) before antigen retrieval by micr...
Methods
Here, we investigated whether intraperitoneal (IP) challenge with LPS, to mimic systemic infection, in the early stages of prion disease can 1) produce exaggerated acute behavioral ( n = 9) and central nervous system (CNS) inflammatory ( n = 4) responses in diseased animals compared with control animals, and 2) whet...
- Use
- Here, we investigated whether intraperitoneal (IP) challenge with LPS, to mimic systemic infection, in the early stages of prion disease can 1) produce exaggerated acute behavioral ( n = 9) and central nervous system (CNS) inflammatory ( n = 4) responses in diseased animals compared with control animals, and 2) whet...
Quantitative PCR
Animals were terminally anesthetized and transcardially perfused with heparinized saline 2 hours postadministration of LPS or saline. Brains were rapidly removed and the hippocampi were dissected out, snap frozen in liquid nitrogen, and stored at -80°C. Total RNA was extracted using Qiagen RNeasy mini col...
- Use
- Animals were terminally anesthetized and transcardially perfused with heparinized saline 2 hours postadministration of LPS or saline. Brains were rapidly removed and the hippocampi were dissected out, snap frozen in liquid nitrogen, and stored at -80°C. Total RNA was extracted using Qiagen RNeasy mini col...
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Open quote workflowStep-by-step procedure
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Methods and Materials
Female C57BL/6 mice, n = 233 (Harlan Olac, United Kingdom), were housed in cages of five at 21°C with a 12:12 hour light-dark cycle (lights on 0700 to 1900) with free access to food and water. They were anesthetized intraperitoneally (IP) with Avertin (Sigma, Poole, United Kingdom) and positioned in a stereotaxic frame. One microliter of a 10% wt/vol scrapie-infected (ME7 strain) C57BL/6 brain homogenate (or 10% wt/vol normal brain homogenate [NBH]) was injected into both dorsal hippocampi (from bregma: anterior-posterior -2.5 mm, lateral -1.7 mm, depth -1.6 mm) using a microsyringe (Hamilton, Reno, Nevada). Further animals ( n = 9) were injected intracerebrally (IC) with N -methyl-D-aspartate (NMDA) (10 mg/mL) to ablate the hippocampus. This surgery was performed under isoflurane anesthesia (approximately 2%) with perisurgical analgesia (carprophen, 5 mg/kg). C...
Quantitative PCR
Animals were terminally anesthetized and transcardially perfused with heparinized saline 2 hours postadministration of LPS or saline. Brains were rapidly removed and the hippocampi were dissected out, snap frozen in liquid nitrogen, and stored at -80°C. Total RNA was extracted using Qiagen RNeasy mini columns (Qiagen, Crawley, United Kingdom) according to the manufacturer's instructions. Contaminating genomic DNA was degraded during extraction with Qiagen DNase1 (Qiagen). Two hundred nanograms of total RNA were reverse-transcribed in a 10 µL reaction volume and 1 µL of the reverse transcription (RT) reaction was used for polymerase chain reaction (PCR). Equipment and reagents for quantitative PCR were supplied by Applied Biosystems (Warrington, United Kingdom). Assays for IL-1β, tumor necrosis factor-alpha (TNF-α), and interferon-beta (IFN-β) were d...
Immunohistochemistry
Immunohistochemistry for cyclooxygenase-2 (COX-2) and IL-1β was carried out on formalin-fixed, paraffin-embedded sections. Sections were dewaxed, rehydrated, quenched with 1% hydrogen peroxide (H 2 O 2 ) in absolute methanol, and washed briefly in phosphate buffered saline (PBS) before antigen retrieval by microwaving in citrate buffer (pH 6) for 2 × 5 minutes. Sections were blocked with 10% horse serum (for COX-2) or 20% normal goat serum (for IL-1β) before overnight incubation with the primary antibody at 1/1000 (goat polyclonal anti-COX-2, Santa Cruz Biotechnology Inc., Santa Cruz, California) or 1/50 (rabbit polyclonal anti-IL-1β, Peprotech, London, United Kingdom) prepared in 20% serum to block nonspecific interactions. The sections were washed and then incubated with the appropriate biotinylated secondary antibody. Labeling was visualized using the avidin-bio...
Measurement outputs
What raw and processed outputs should exist?
Female C57BL/6 mice, n = 233 (Harlan Olac, United Kingdom), were housed in cages of five at 21°C with a 12:12 hour light-dark cycle (lights on 0700 to 1900) with free acces...
- Raw artifact
- Per-sample or per-animal endpoint measurements collected during the experiment
- Processed artifact
- Structured table with cleaned measurements ready for comparison
- Reported as
- Summary statistics and between-group or across-timepoint comparisons
Animals were terminally anesthetized and transcardially perfused with heparinized saline 2 hours postadministration of LPS or saline. Brains were rapidly removed and the hippoca...
- Raw artifact
- Per-sample or per-animal endpoint measurements collected during the experiment
- Processed artifact
- Structured table with cleaned measurements ready for comparison
- Reported as
- Summary statistics and between-group or across-timepoint comparisons
Analysis plan
How should the outputs become interpretable results?
Acquisition
Collect raw experimental outputs with enough metadata to preserve sample identity, condition, and timing.
inferred from protocolPreprocessing / cleaning
Female C57BL/6 mice, n = 233 (Harlan Olac, United Kingdom), were housed in cages of five at 21°C with a 12:12 hour light-dark cycle (lights on 0700 to 1900) with free access to food and water.
from paperScoring or quantification
Quantify the primary readouts for this experiment: Female C57BL/6 mice, n = 233 (Harlan Olac, United Kingdom), were housed in cages of five at 21°C with a 12:12 hour light-dark cycle (lights on 0700 to 1900) with free acces...; Animals were terminally anesthetized and transcardially perfused with heparinized saline 2 hours postadministration of LPS or saline. Brains were rapidly removed and the hippoca....
from paperStatistical comparison
Female C57BL/6 mice, n = 233 (Harlan Olac, United Kingdom), were housed in cages of five at 21°C with a 12:12 hour light-dark cycle (lights on 0700 to 1900) with free acces...
from paperReporting output
Report representative outputs alongside summary comparisons for Female C57BL/6 mice, n = 233 (Harlan Olac, United Kingdom), were housed in cages of five at 21°C with a 12:12 hour light-dark cycle (lights on 0700 to 1900) with free acces..., Animals were terminally anesthetized and transcardially perfused with heparinized saline 2 hours postadministration of LPS or saline. Brains were rapidly removed and the hippoca....
inferred from protocolStructured statistical methods
Female C57BL/6 mice, n = 233 (Harlan Olac, United Kingdom), were housed in cages of five at 21°C with a 12:12 hour light-dark cycle (lights on 0700 to 1900) with free acces...
source structuredSource and audit
What supports the facts on this page?
Evidence quotes (3)
Female C57BL/6 mice, n = 233 (Harlan Olac, United Kingdom), were housed in cages of five at 21°C with a 12:12 hour light-dark cycle (lights on 0700 to 1900) with free access to food and water. They were anesthetized intraperitoneally (IP) with Avertin (Sigma, Poole, United Kingdom) and positioned in a stereotaxic frame. One microliter of a 10% wt/vol scrapie-infected (ME7 strain) C57BL/6 brain homogenate (or 10% wt/vol normal brain homogenate [NBH]) was injected into both dorsal hippocampi (from bregma: anterior-posterior -2.5 mm, lateral -1.7 mm, depth -1.6 mm) using a microsyringe (Hamilton, Reno, Nevada). Further animals ( n = 9) were injected intracerebrally (IC) with N -methyl-D-aspartate (NMDA) (10 mg/mL) to ablate the hippocampus. This surgery was performed under isoflurane anesthesia (approximately 2%) with perisurgical analgesia (carprophen, 5 mg/kg). Chlordiazepoxide (CDZP; 10 mg/kg) and atropine (.075 mg/kg) were given to minimize seizure activity and bronchial secretions, respectively. In all other respects, the hippocampal lesions were performed as previously described ( ). Sham-operated animals ( n = 12) had eight holes drilled in the skull b...
Animals were terminally anesthetized and transcardially perfused with heparinized saline 2 hours postadministration of LPS or saline. Brains were rapidly removed and the hippocampi were dissected out, snap frozen in liquid nitrogen, and stored at -80°C. Total RNA was extracted using Qiagen RNeasy mini columns (Qiagen, Crawley, United Kingdom) according to the manufacturer's instructions. Contaminating genomic DNA was degraded during extraction with Qiagen DNase1 (Qiagen). Two hundred nanograms of total RNA were reverse-transcribed in a 10 µL reaction volume and 1 µL of the reverse transcription (RT) reaction was used for polymerase chain reaction (PCR). Equipment and reagents for quantitative PCR were supplied by Applied Biosystems (Warrington, United Kingdom). Assays for IL-1β, tumor necrosis factor-alpha (TNF-α), and interferon-beta (IFN-β) were designed using the published sequences for these genes and Primer Express software (Applied Biosystems, Warrington, United Kingdom) and quantified using a relative standard curve. These methods and primer sequences have been described elsewhere ( ) and are included in full in. All PCR data were norm...
Immunohistochemistry for cyclooxygenase-2 (COX-2) and IL-1β was carried out on formalin-fixed, paraffin-embedded sections. Sections were dewaxed, rehydrated, quenched with 1% hydrogen peroxide (H 2 O 2 ) in absolute methanol, and washed briefly in phosphate buffered saline (PBS) before antigen retrieval by microwaving in citrate buffer (pH 6) for 2 × 5 minutes. Sections were blocked with 10% horse serum (for COX-2) or 20% normal goat serum (for IL-1β) before overnight incubation with the primary antibody at 1/1000 (goat polyclonal anti-COX-2, Santa Cruz Biotechnology Inc., Santa Cruz, California) or 1/50 (rabbit polyclonal anti-IL-1β, Peprotech, London, United Kingdom) prepared in 20% serum to block nonspecific interactions. The sections were washed and then incubated with the appropriate biotinylated secondary antibody. Labeling was visualized using the avidin-biotin-peroxidase complex (ABC method, using.015% vol/vol hydrogen peroxide as substrate and diaminobenzidine as chromagen (Sigma) as previously described ( ).
Machine-readable layer
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