Source Paper
Source Paper
Orsolya M. Palacios, Juan J. Carmona, Shaday Michan, Ke Yun Chen, Yasuko Manabe et al.
Aging • 2009
SIRT3 is a member of the sirtuin family of NAD(+)-dependent deacetylases, which is localized to the mitochondria and is enriched in kidney, brown adipose tissue, heart, and other metabolically active tissues. We report here that SIRT3 responds dynamically to both exercise and nutritional signals in skeletal muscle to coordinate downstream molecular responses. We show that exercise training increases SIRT3 expression as well as associated CREB phosphorylation and PGC-1alpha up-regulation. Furthermore, we show that SIRT3 is more highly expressed in slow oxidative type I soleus muscle compared to fast type II extensor digitorum longus or gastrocnemius muscles. Additionally, we find that SIRT3 protein levels in skeletal muscle are sensitive to diet, for SIRT3 expression increases by fasting and caloric restriction, yet it is decreased by high-fat diet. Interestingly, the caloric restriction regimen also leads to phospho-activation of AMPK in muscle. Conversely in SIRT3 knockout mice, we find that the phosphorylation of both AMPK and CREB and the expression of PGC-1alpha are down regulated, suggesting that these key cellular factors may be important components of SIRT3-mediated biological signals in vivo.
Objective: To examine the effects of voluntary wheel-running exercise training on muscle protein expression (SIRT3, CREB, phospho-CREB/Ser122, PGC-1α) and mitochondrial enzyme activity (citrate synthase) in triceps muscle
This is a Voluntary Exercise Training protocol using mouse as the model organism. The procedure involves 6 procedural steps, 2 equipment items, 10 materials. Extracted from a 2009 paper published in Aging.
Model and subjects
mouse • FVB/NJ • unknown • 7 weeks old at start of training
Study window
~6 week study window
Core workflow
Animal housing and acclimation • Voluntary exercise training period • Diet provision
Primary readouts
Key equipment and reagents
Verified items
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7-week-old male and female FVB/NJ mice were housed in individual cages with or without rodent running wheels
Note: Mice were assigned to either exercise (with wheels) or control (without wheels) groups
“7-week-old male and female FVB/NJ mice were wheel-cage trained for 6 weeks and fed PicoLab Mouse Diet 20 (LabDiet/Purina). In brief, mice were housed in individual cages with or without rodent running wheels”
Mice in the exercise group were allowed to voluntarily run on wheels during the 6-week training period
Note: Exercise was voluntary; mice could run at their own discretion
“the animals could exercise voluntarily during a 6-week training period”
All mice were fed PicoLab Mouse Diet 20 throughout the 6-week training period
Note: Standard diet provided ad libitum
“fed PicoLab Mouse Diet 20 (LabDiet/Purina)”
At the end of the 6-week training period, mice were euthanized and triceps muscles were removed
Note: Triceps muscles were collected for subsequent protein expression and enzyme activity analysis
“At the end of the 6 weeks, mice were euthanized, triceps muscles were removed and subsequently analyzed”
Triceps muscle samples were analyzed for SIRT3, CREB, phospho-CREB/Ser122, and PGC-1α protein expression using Western blot with specific antibodies
Note: Multiple primary antibodies were used to detect different proteins and phosphorylation states
“triceps muscles were removed and subsequently analyzed for SIRT3, CREB, phospho-CREB/Ser122, and PGC-1α protein expression”
Citrate synthase activity was measured from triceps muscle samples as a mitochondrial marker post-exercise training
Note: Citrate synthase serves as an indicator of mitochondrial content and oxidative capacity
“Citrate synthase activity was measured as a mitochondrial marker post-exercise training from triceps samples”
This section explains what the experiment is doing, which readouts matter, what the data artifacts usually look like, and how the analysis should flow from raw capture to reported result.
To examine the effects of voluntary wheel-running exercise training on muscle protein expression (SIRT3, CREB, phospho-CREB/Ser122, PGC-1α) and mitochondrial enzyme activity (citrate synthase) in triceps muscle
Objective
To examine the effects of voluntary wheel-running exercise training on muscle protein expression (SIRT3, CREB, phospho-CREB/Ser122, PGC-1α) and mitochondrial enzyme activity (citrate synthase) in triceps muscle
Subjects
From papermouse • FVB/NJ • unknown • 7 weeks old at start of training
Cohort notes
From paperMice were housed in individual cages with or without rodent running wheels during the 6-week training period
Animal housing and acclimation
Voluntary exercise training period (6 weeks)
Diet provision (6 weeks)
Tissue collection
SIRT3 protein expression in triceps muscle
From paperNot explicitly described in the provided methods text
Artifact type
Endpoint measurements summarized by group or timepoint
Comparison focus
Compare endpoint magnitude between groups, timepoints, or both
CREB protein expression in triceps muscle
From paperNot explicitly described in the provided methods text
Artifact type
Endpoint measurements summarized by group or timepoint
Comparison focus
Compare endpoint magnitude between groups, timepoints, or both
Phospho-CREB/Ser122 protein expression in triceps muscle
From paperNot explicitly described in the provided methods text
Artifact type
Endpoint measurements summarized by group or timepoint
Comparison focus
Compare endpoint magnitude between groups, timepoints, or both
PGC-1α protein expression in triceps muscle
From paperNot explicitly described in the provided methods text
Artifact type
Endpoint measurements summarized by group or timepoint
Comparison focus
Compare endpoint magnitude between groups, timepoints, or both
SIRT3 protein expression in triceps muscle
From paperRaw artifact
Per-sample or per-animal endpoint measurements collected during the experiment
Processed artifact
Structured table with cleaned measurements ready for comparison
Final reported form
Summary statistics and between-group or across-timepoint comparisons
CREB protein expression in triceps muscle
From paperRaw artifact
Per-sample or per-animal endpoint measurements collected during the experiment
Processed artifact
Structured table with cleaned measurements ready for comparison
Final reported form
Summary statistics and between-group or across-timepoint comparisons
Phospho-CREB/Ser122 protein expression in triceps muscle
From paperRaw artifact
Per-sample or per-animal endpoint measurements collected during the experiment
Processed artifact
Structured table with cleaned measurements ready for comparison
Final reported form
Summary statistics and between-group or across-timepoint comparisons
PGC-1α protein expression in triceps muscle
From paperRaw artifact
Per-sample or per-animal endpoint measurements collected during the experiment
Processed artifact
Structured table with cleaned measurements ready for comparison
Final reported form
Summary statistics and between-group or across-timepoint comparisons
Acquisition
Collect raw experimental outputs with enough metadata to preserve sample identity, condition, and timing.
Preprocessing / cleaning
Not explicitly described in the provided methods text
Scoring or quantification
Quantify the primary readouts for this experiment: SIRT3 protein expression in triceps muscle; CREB protein expression in triceps muscle; Phospho-CREB/Ser122 protein expression in triceps muscle; PGC-1α protein expression in triceps muscle.
Statistical comparison
Statistical method not yet structured for this page.
Reporting output
Report representative outputs alongside summary comparisons for SIRT3 protein expression in triceps muscle, CREB protein expression in triceps muscle, Phospho-CREB/Ser122 protein expression in triceps muscle, PGC-1α protein expression in triceps muscle.
Source links and direct wording from the methods section for validation and deeper review.
Citation
Orsolya M. Palacios et al. (2009). Diet and exercise signals regulate SIRT3 and activate AMPK and PGC-1α in skeletal muscle. Aging
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Nalgene
LabDiet/Purina
Genemed Synthesis, Inc.
Covance
Cell Signaling
Cell Signaling
Cell Signaling
Cell Signaling
Calbiochem
Santa Cruz
Abcam
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