Florez-Paz D, Bali KK, Kuner R, et al. Scientific reports 2016;6:25923.
The test records were read three times by AI and checked by code. No person has reviewed them yet. How records are made
| Setting | Value | Paper’s words |
|---|---|---|
| Beam size |
| “Balance was tested on a 1 m long, 2 cm wide beam” |
| Beam height |
| “beam suspended on two poles 50 cm above a table top” |
| Number of trials |
| “each of which was repeated at least three times in each animal” |
| Other settings in the paper | ||
| Aversive stimulus | a lamp above the start point | “a lamp above the start point served as an aversive stimulus” |
| Box at the finish point | Food | “Food was placed in a box at the finish point to attract the mouse” |
| Apparatus | ||
| Balance beam | “Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top. Food was placed in a box at the finish point to attract the mouse and a lamp above the start point served as an aversive stimulus. A video camera on a tripod was used to record the time required to cross the beam.” | |
| Setting | Value | Paper’s words |
|---|---|---|
| Walkway size |
| “the mice were placed in a glass chamber (85 cm long and 8.5 cm wide) and they were allowed to move freely across the walkway” |
| Number of runs |
| “scored all the tests, each of which was repeated at least three times in each animal” “the values from the individual tracks were averaged” |
| Not in the Methods | Run duration criterion | |
| Apparatus | ||
| CatWalk system 7.1 | Noldus Information Technology | “The animal’s gait was tested with the CatWalk system 7.1 (Noldus Information Technology), where the mice were placed in a glass chamber (85 cm long and 8.5 cm wide) and they were allowed to move freely across the walkway.” |
| CatWalk software | “allowing the paw prints to be captured by a video camera and analyzed with the CatWalk software” | |
| Setting | Value | Paper’s words |
|---|---|---|
| Rod speed |
| “The initial speed of rotation was 5 rpm and it accelerated to 20 rpm” |
| Number of trials |
| “all the tests, each of which was repeated at least three times in each animal” |
| Not in the Methods | Trial duration | |
| Other settings in the paper | ||
| Diameter rotating cylinder | 5 cm | “the mice were placed on a 5 cm diameter rotating cylinder” |
| Apparatus | ||
| Rotarod | Ugo Basile | “In the rotarod test (Ugo Basile), the mice were placed on a 5 cm diameter rotating cylinder along which they must walk in order not to fall off. The initial speed of rotation was 5 rpm and it accelerated to 20 rpm.” |
A person went through this paper’s whole Methods section, beyond the behavioral tests, and confirmed these 118 facts against the text. No person has checked the test records above.
| Item | Value | Paper’s words |
|---|---|---|
| This studyBlinding | The same investigator scored all the tests | “The same investigator scored all the tests” |
| Item | Value | Paper’s words |
|---|---|---|
| Experiment subjectsSpecies | mouse | “Adult C57Bl/6J mice were used in this study.” |
| Experiment subjectsStrain | C57Bl/6J | “Adult C57Bl/6J mice were used in this study.” |
| Experiment subjectsAge | 6–9 week-old | “6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice” |
| Experiment subjectsSex | male | “Male animals were used for in vitro recordings” |
| Experimental miceAge | 6–9 week-old | “we tested a cohort of 6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice” |
| Pvalb-Cre:RCE:Piezo2cKO miceLabel | Pvalb-Cre:RCE:Piezo2cKO mice | “we tested a cohort of 6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice (n = 7)” |
| Pvalb-Cre:RCE:Piezo2cKO miceN allocated | 7 | “Pvalb-Cre:RCE:Piezo2cKO mice (n = 7)” |
| Behavioral test subjectsAge | 6–9 week-old | “a cohort of 6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice (n = 7) and their control littermates (n = 7)” |
| Behavioral test subjectsSex | female | “6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice” |
| Pvalb-Cre:RCE:Piezo2cKO groupLabel | Pvalb-Cre:RCE:Piezo2cKO | “6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice (n = 7)” |
| Pvalb-Cre:RCE:Piezo2cKO groupN allocated | 7 | “6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice (n = 7)” |
| control littermates groupLabel | control littermates | “and their control littermates (n = 7)” |
| control littermates groupN allocated | 7 | “and their control littermates (n = 7)” |
| Item | Value | Paper’s words |
|---|---|---|
| vibrating slicerName | vibrating slicer | “the brainstem was attached at its rostral end to the platform of the vibrating slicer” |
| vibrating slicerModel | series 1000 | “the vibrating slicer (Pelco, TPI, series 1000, St. Louis, USA)” |
| isofluraneName | isoflurane | “animals were anesthetized by isoflurane inhalation” |
| DiI tracerManufacturer | Life Technology, Carlbad, USA | “the DiI tracer (5%: Life Technology, Carlbad, USA)” |
| DiI tracerName | DiI tracer | “the DiI tracer (5%: Life Technology, Carlbad, USA) was injected” |
| cyanoacrylateName | cyanoacrylate | “The incision was closed with a drop of cyanoacrylate” |
| artificial cerebrospinal fluid (ACSF)Name | artificial cerebrospinal fluid (ACSF) | “immersed in ice-cold, oxygenated (95% O2–5% CO2) artificial cerebrospinal fluid (ACSF)” |
| ACSFName | artificial cerebrospinal fluid (ACSF) | “artificial cerebrospinal fluid (ACSF)” |
| Multiclamp 700 amplifierName | Multiclamp 700 amplifier | “using a Multiclamp 700 amplifier” |
| pCLAMP 10Name | pCLAMP 10 | “data were acquired using pCLAMP 10 software” |
| pCLAMP 10Version | 10 | “the data were acquired using pCLAMP 10 software” |
| Digidata 1440Manufacturer | Molecular Devices, Sunnyvale, USA | “Digidata 1440 (Molecular Devices, Sunnyvale, USA)” |
| Digidata 1440Name | Digidata 1440 | “and a Digidata 1440 (Molecular Devices, Sunnyvale, USA)” |
| borosilicate glass capillariesName | borosilicate glass capillaries | “Patch electrodes of 4–7 MΩ were pulled from borosilicate glass capillaries” |
| patch electrodesName | patch electrodes | “Patch electrodes of 4–7 MΩ were pulled from borosilicate glass capillaries” |
| internal solutionName | internal solution | “The pipettes were filled with an internal solution containing (in mM): 115 K-gluconate, 25 KCl, 9 NaCl, 10 HEPES, 0.2 EGTA, 1 MgCl2, 3 K2-ATP and 1 Na-GTP, pH 7.2 adjusted with KOH and 280–290 mosmol Kg−1.” |
| external control solutionName | external control solution | “The control external solution consisted of (in mM): 140 NaCl, 3 KCl, 1 CaCl2 2 MgCl2, 10 glucose and 10 HEPES (pH 7.2).” |
| recording chamberName | recording chamber | “Slices were transferred to a recording chamber and perfused with oxygenated external control solution.” |
| fluorescence microscopeName | fluorescence microscopy (Olympus BX50WI) | “fluorescence microscopy (Olympus BX50WI)” |
| fluorescence microscopeManufacturer | Olympus | “fluorescence microscopy (Olympus BX50WI)” |
| Imago cameraManufacturer | Till photonics GmbH, Germany | “an Imago camera (both Till photonics GmbH, Germany)” |
| Imago cameraName | Imago camera | “an Imago camera (both Till photonics GmbH, Germany)” |
| Imaging Workbench 6.0Name | Imaging Workbench 6.0 | “the Imaging Workbench 6.0 software (INDEC BioSystems)” |
| Imaging Workbench 6.0Manufacturer | INDEC BioSystems | “the Imaging Workbench 6.0 software (INDEC BioSystems)” |
| Imaging Workbench 6.0Version | 6.0 | “the Imaging Workbench 6.0 software (INDEC BioSystems)” |
| heat-closed glass pipetteName | heat-closed glass pipette | “using a heat-closed glass pipette driven by a MM3A-LS piezoelectric micromanipulator” |
| MM3A-LS piezoelectric micromanipulatorManufacturer | Kleindiek, Reutlingen, Germany | “MM3A-LS piezoelectric micromanipulator (Kleindiek, Reutlingen, Germany)” |
| MM3A-LS piezoelectric micromanipulatorName | MM3A-LS piezoelectric micromanipulator | “MM3A-LS piezoelectric micromanipulator (Kleindiek, Reutlingen, Germany)” |
| Piezo2 shRNACatalog number | TR509519 | “Cat. No. TR509519: Origene, USA” |
| Piezo2 shRNAManufacturer | Origene, USA | “Cat. No. TR509519: Origene, USA” |
| AAV backbone PAM vectorName | AAV backbone of the PAM vector | “adeno-associated viral (AAV) backbone of the PAM vector” |
| U6 promoterName | U6 promoter | “along with the U6 promoter” |
| GFP reporter cassetteName | GFP reporter cassette | “The expression of the native GFP reporter cassette in the final clones was confirmed by the strong GFP signal following transfection into HEK-293 cells” |
| HEK-293 cellsName | HEK-293 cells | “following transfection into HEK-293 cells” |
| rAAV serotype 2/8 particlesName | rAAV serotype 2/8 particles | “The rAAV serotype 2/8 particles carrying shRNA against Piezo2 (AAV-Piezo2-sh-1) or a scrambled shRNA were generated in house by co-transfecting HEK-293 cells with the cloned rAAV backbone plasmid and the helper 2/8 plasmids” |
| AAV-Piezo2-sh-1Name | AAV-Piezo2-sh-1 | “rAAV serotype 2/8 particles carrying shRNA against Piezo2 (AAV-Piezo2-sh-1)” |
| scrambled shRNA virusName | scrambled shRNA | “or a scrambled shRNA were generated” |
| Nanoliter2010Manufacturer | WPI | “nanoliter injector microprocessor (Nanoliter2010, WPI)” |
| glass micropipetteName | glass micropipette | “The virus was delivered using a glass micropipette” |
| nanoliter injector microprocessorName | Nanoliter2010 | “nanoliter injector microprocessor (Nanoliter2010, WPI)” |
| Nanoliter2010 injectorManufacturer | WPI | “nanoliter injector microprocessor (Nanoliter2010, WPI)” |
| AAV-Piezo2-sh-1 injectionVolume | 700 nl | “the viral solution was injected in a total volume of 700 nl” |
| bonewaxName | bonewax | “a layer of adhesive cement (bonewax) was applied around the hole” |
| cyanocrylateName | cyanocrylate | “We then sutured the skin with a tissue adhesive (cyanocrylate)” |
| BuprenorphineName | Buprenorphine | “The mice were given 0.1 mg/Kg Buprenorphine as an analgesic” |
| Buprenorphine administrationDose | 0.1 mg/Kg | “The mice were given 0.1 mg/Kg Buprenorphine as an analgesic” |
| ketamineName | ketamine | “Mice were anesthetized with ketamine (200 mg/ml)” |
| xylacineName | xylacine | “xylacine (50 mg/ml)” |
| paraformaldehyde (PFA)Name | paraformaldehyde (PFA) | “perfused with 4% paraformaldehyde (PFA) in 0.1 M phosphate buffer (PB)” |
| phosphate buffer (PB)Name | phosphate buffer (PB) | “perfused with 4% paraformaldehyde (PFA) in 0.1 M phosphate buffer (PB)” |
| VT 1000S vibratomeManufacturer | Leica | “VT 1000S, Leica” |
| blocking solutionName | blocking solution | “incubated for 30 min in blocking solution at room temperature (3% goat serum in TTBS)” |
| goat serumName | goat serum | “3% goat serum in TTBS” |
| TTBSName | TTBS | “3% goat serum in TTBS” |
| PBSName | PBS | “washing three times in PBS (5 min)” |
| DAPIManufacturer | Life Technology, Carlsbad, USA | “DAPI (2 μM; Life Technology, Carlsbad, USA)” |
| DAPIName | DAPI | “nuclei were stained with DAPI (2 μM; Life Technology, Carlsbad, USA)” |
| rabbit anti-Piezo2 antibodyManufacturer | Novus Biological, Littleton, USA | “rabbit anti-Piezo2 (1:100; NBP1-78624, Novus Biological, Littleton, USA)” |
| rabbit anti-Piezo2 antibodyName | rabbit anti-Piezo2 | “rabbit anti-Piezo2 (1:100; NBP1-78624, Novus Biological, Littleton, USA)” |
| rabbit anti-Piezo2Catalog number | NBP1-78624 | “rabbit anti-Piezo2 (1:100; NBP1-78624, Novus Biological, Littleton, USA)” |
| chicken anti-GFP antibodyManufacturer | Abcam, Cambridge, UK | “chicken anti-GFP (1:1000; AB13970, Abcam, Cambridge, UK)” |
| chicken anti-GFP antibodyName | chicken anti-GFP | “chicken anti-GFP (1:1000; AB13970, Abcam, Cambridge, UK)” |
| chicken anti-GFPCatalog number | AB13970 | “chicken anti-GFP (1:1000; AB13970, Abcam, Cambridge, UK)” |
| goat-anti rabbit AlexaFluor-594Name | goat-anti rabbit AlexaFluor-594 | “goat-anti rabbit AlexaFluor-594 (1:1000; A11012)” |
| goat-anti rabbit AlexaFluor-594Catalog number | A11012 | “goat-anti rabbit AlexaFluor-594 (1:1000; A11012)” |
| goat-anti chicken AlexaFluor-488Manufacturer | Life Technology | “goat-anti chicken AlexaFluor-488 (1:2000; A11039, Life Technology)” |
| goat-anti chicken AlexaFluor-488Name | goat-anti chicken AlexaFluor-488 | “goat-anti chicken AlexaFluor-488 (1:2000; A11039, Life Technology)” |
| goat-anti chicken AlexaFluor-488Catalog number | A11039 | “goat-anti chicken AlexaFluor-488 (1:2000; A11039, Life Technology)” |
| balance beamName | balance beam | “Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top.” |
| table topName | table top | “beam suspended on two poles 50 cm above a table top” |
| lampName | lamp | “a lamp above the start point served as an aversive stimulus” |
| tripodName | tripod | “A video camera on a tripod was used” |
| video cameraName | video camera | “A video camera on a tripod was used to record the time required to cross the beam.” |
| metal barName | metal bar | “For two limb hanging we used a 2 mm diameter metal bar mounted between two ring stands 37 cm above a cotton pad” |
| ring standsName | ring stands | “metal bar mounted between two ring stands” |
| cotton padName | cotton pad | “cotton pad that was situated under the wire” |
| rotarodManufacturer | Ugo Basile | “rotarod test (Ugo Basile)” |
| rotarodName | rotarod | “In the rotarod test (Ugo Basile)” |
| rotating cylinderName | rotating cylinder | “the mice were placed on a 5 cm diameter rotating cylinder” |
| CatWalk system 7.1Manufacturer | Noldus Information Technology | “CatWalk system 7.1 (Noldus Information Technology)” |
| CatWalk system 7.1Name | CatWalk system 7.1 | “CatWalk system 7.1 (Noldus Information Technology)” |
| CatWalk systemVersion | 7.1 | “CatWalk system 7.1 (Noldus Information Technology)” |
| glass chamberName | glass chamber | “the mice were placed in a glass chamber (85 cm long and 8.5 cm wide)” |
| fluorescent lightName | fluorescent light | “Fluorescent light is emitted inside the apparatus” |
| CatWalk softwareName | CatWalk software | “analyzed with the CatWalk software” |
| Clampex 10.1Name | Clampex 10.1 | “The data were analyzed with the Clampex 10.1 software (Molecular Devices Corp., Sunnyvale, CA, USA)” |
| Origin 7.5Name | Origin 7.5 | “Origin 7.5 (Origin Lab Corporation, Northampton, MA, USA)” |
| SigmaStatName | SigmaStat | “Statistical analyses were performed with SigmaStat (Systat Software Inc.)” |
| Item | Value | Paper’s words |
|---|---|---|
| Anesthetize animals for dye injectionAction | animals were anesthetized by isoflurane inhalation | “animals were anesthetized by isoflurane inhalation” |
| Allow DiI diffusionAction | the DiI was allowed to diffuse retrogradely into the cell bodies in the MTN | “the DiI was allowed to diffuse retrogradely into the cell bodies in the MTN” |
| Attach brainstem to vibrating slicerAction | The brainstem was attached at its rostral end to the platform of the vibrating slicer (Pelco, TPI, series 1000, St. Louis, USA) and covered with ice-cold ACSF | “The brainstem was attached at its rostral end to the platform of the vibrating slicer (Pelco, TPI, series 1000, St. Louis, USA) and covered with ice-cold ACSF” |
| Apply mechanical stepsAction | A series of mechanical steps in 1 μm increments were applied every 10 s | “A series of mechanical steps in 1 μm increments were applied every 10 s” |
| Apply adhesive cement and sutureAction | a layer of adhesive cement (bonewax) was applied around the hole. We then sutured the skin with a tissue adhesive (cyanocrylate) | “a layer of adhesive cement (bonewax) was applied around the hole. We then sutured the skin with a tissue adhesive (cyanocrylate)” |
| Administer Buprenorphine and recoveryAction | The mice were given 0.1 mg/Kg Buprenorphine as an analgesic and they remained on a heated pad until they recovered from the anesthesia | “The mice were given 0.1 mg/Kg Buprenorphine as an analgesic and they remained on a heated pad until they recovered from the anesthesia” |
| Anesthetize for perfusionAction | Mice were anesthetized with ketamine (200 mg/ml) and xylacine (50 mg/ml) | “Mice were anesthetized with ketamine (200 mg/ml) and xylacine (50 mg/ml)” |
| Apply secondary antibodiesAction | the secondary antibodies were applied for 2 h at room temperature | “the secondary antibodies were applied for 2 h at room temperature” |
| Animal housingParameter | 12 h light/dark cycle at 21 °C with food and water available ad libitum | “The animals were housed on a 12 h light/dark cycle at 21 °C with food and water available ad libitum.” |
| Balance beam testAction | Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top. Food was placed in a box at the finish point to attract the mouse and a lamp above the start point served as an aversive stimulus. A video camera on a tripod was used to record the time required to cross the beam. | “Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top. Food was placed in a box at the finish point to attract the mouse and a lamp above the start point served as an aversive stimulus. A video camera on a tripod was used to record the time required to cross the beam.” |
| Behavioral test: balance beamAction | Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top | “Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top” |
| Behavioral test: balance beamParameter | 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top | “Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top” |
| Behavioral test: CatWalk gait analysisAction | The animal’s gait was tested with the CatWalk system 7.1 (Noldus Information Technology) | “The animal’s gait was tested with the CatWalk system 7.1 (Noldus Information Technology)” |
| Analyze regularity indexAction | We analyzed the regularity index (%) that expresses the number of normal step sequence patterns relative to the total number of paw placements, a fractional measure of inter-paw coordination | “We analyzed the regularity index (%) that expresses the number of normal step sequence patterns relative to the total number of paw placements, a fractional measure of inter-paw coordination” |
| Behavioral test scoringAction | The same investigator scored all the tests, each of which was repeated at least three times in each animal, and the values from the individual tracks were averaged. | “The same investigator scored all the tests, each of which was repeated at least three times in each animal, and the values from the individual tracks were averaged.” |
| Animal habituation and trainingAction | All the animals were habituated and trained in the different tests prior to performing the experiment. | “All the animals were habituated and trained in the different tests prior to performing the experiment.” |