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Papers/Florez-Paz et al. 2016

A critical role for Piezo2 channels in the mechanotransduction of mouse proprioceptive neurons

Florez-Paz D, Bali KK, Kuner R, et al. Scientific reports 2016;6:25923.

The test records were read three times by AI and checked by code. No person has reviewed them yet. How records are made

Tests in this paper

  • Balance beam test
  • Gait analysis
  • Rotarod test
  • Facts checked by a reviewer

Balance beam test

Compare with 4 other papers
SettingValuePaper’s words
Beam size
  • 1 m long, 2 cm wide

“Balance was tested on a 1 m long, 2 cm wide beam”
Beam height
  • 50 cm

“beam suspended on two poles 50 cm above a table top”
Number of trials
  • Unclear

    at least three times

    One passage covers all tests at once. It gives a lower bound on repetitions per animal but does not say whether these fell within one session or day or across sessions.

“each of which was repeated at least three times in each animal”
Other settings in the paper
Aversive stimulus

a lamp above the start point

“a lamp above the start point served as an aversive stimulus”
Box at the finish point

Food

“Food was placed in a box at the finish point to attract the mouse”
Apparatus
Balance beam
“Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top. Food was placed in a box at the finish point to attract the mouse and a lamp above the start point served as an aversive stimulus. A video camera on a tripod was used to record the time required to cross the beam.”

Gait analysis

Compare with 8 other papers
SettingValuePaper’s words
Walkway size
  • 85 cm long and 8.5 cm wide

“the mice were placed in a glass chamber (85 cm long and 8.5 cm wide) and they were allowed to move freely across the walkway”
Number of runs
  • at least three times

“scored all the tests, each of which was repeated at least three times in each animal”
“the values from the individual tracks were averaged”
Not in the MethodsRun duration criterion
Apparatus
CatWalk system 7.1

Noldus Information Technology

“The animal’s gait was tested with the CatWalk system 7.1 (Noldus Information Technology), where the mice were placed in a glass chamber (85 cm long and 8.5 cm wide) and they were allowed to move freely across the walkway.”
CatWalk software
“allowing the paw prints to be captured by a video camera and analyzed with the CatWalk software”

Rotarod test

Compare with 9 other papers
SettingValuePaper’s words
Rod speed
  • 5 rpm and it accelerated to 20 rpm

“The initial speed of rotation was 5 rpm and it accelerated to 20 rpm”
Number of trials
  • Unclear

    at least three times

    One passage gives one repetition count for all tests, including the rotarod, as repetitions per animal. It does not say whether these were trials within one session or day or repeats across sessions, and it is only a lower bound.

“all the tests, each of which was repeated at least three times in each animal”
Not in the MethodsTrial duration
Other settings in the paper
Diameter rotating cylinder

5 cm

“the mice were placed on a 5 cm diameter rotating cylinder”
Apparatus
Rotarod

Ugo Basile

“In the rotarod test (Ugo Basile), the mice were placed on a 5 cm diameter rotating cylinder along which they must walk in order not to fall off. The initial speed of rotation was 5 rpm and it accelerated to 20 rpm.”

Facts checked by a reviewer

A person went through this paper’s whole Methods section, beyond the behavioral tests, and confirmed these 118 facts against the text. No person has checked the test records above.

Study design (1)
ItemValuePaper’s words
This studyBlinding

The same investigator scored all the tests

“The same investigator scored all the tests”
Subjects and groups (13)
ItemValuePaper’s words
Experiment subjectsSpecies

mouse

“Adult C57Bl/6J mice were used in this study.”
Experiment subjectsStrain

C57Bl/6J

“Adult C57Bl/6J mice were used in this study.”
Experiment subjectsAge

6–9 week-old

“6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice”
Experiment subjectsSex

male

“Male animals were used for in vitro recordings”
Experimental miceAge

6–9 week-old

“we tested a cohort of 6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice”
Pvalb-Cre:RCE:Piezo2cKO miceLabel

Pvalb-Cre:RCE:Piezo2cKO mice

“we tested a cohort of 6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice (n = 7)”
Pvalb-Cre:RCE:Piezo2cKO miceN allocated

7

“Pvalb-Cre:RCE:Piezo2cKO mice (n = 7)”
Behavioral test subjectsAge

6–9 week-old

“a cohort of 6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice (n = 7) and their control littermates (n = 7)”
Behavioral test subjectsSex

female

“6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice”
Pvalb-Cre:RCE:Piezo2cKO groupLabel

Pvalb-Cre:RCE:Piezo2cKO

“6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice (n = 7)”
Pvalb-Cre:RCE:Piezo2cKO groupN allocated

7

“6–9 week-old female Pvalb-Cre:RCE:Piezo2cKO mice (n = 7)”
control littermates groupLabel

control littermates

“and their control littermates (n = 7)”
control littermates groupN allocated

7

“and their control littermates (n = 7)”
Materials and equipment (88)
ItemValuePaper’s words
vibrating slicerName

vibrating slicer

“the brainstem was attached at its rostral end to the platform of the vibrating slicer”
vibrating slicerModel

series 1000

“the vibrating slicer (Pelco, TPI, series 1000, St. Louis, USA)”
isofluraneName

isoflurane

“animals were anesthetized by isoflurane inhalation”
DiI tracerManufacturer

Life Technology, Carlbad, USA

“the DiI tracer (5%: Life Technology, Carlbad, USA)”
DiI tracerName

DiI tracer

“the DiI tracer (5%: Life Technology, Carlbad, USA) was injected”
cyanoacrylateName

cyanoacrylate

“The incision was closed with a drop of cyanoacrylate”
artificial cerebrospinal fluid (ACSF)Name

artificial cerebrospinal fluid (ACSF)

“immersed in ice-cold, oxygenated (95% O2–5% CO2) artificial cerebrospinal fluid (ACSF)”
ACSFName

artificial cerebrospinal fluid (ACSF)

“artificial cerebrospinal fluid (ACSF)”
Multiclamp 700 amplifierName

Multiclamp 700 amplifier

“using a Multiclamp 700 amplifier”
pCLAMP 10Name

pCLAMP 10

“data were acquired using pCLAMP 10 software”
pCLAMP 10Version

10

“the data were acquired using pCLAMP 10 software”
Digidata 1440Manufacturer

Molecular Devices, Sunnyvale, USA

“Digidata 1440 (Molecular Devices, Sunnyvale, USA)”
Digidata 1440Name

Digidata 1440

“and a Digidata 1440 (Molecular Devices, Sunnyvale, USA)”
borosilicate glass capillariesName

borosilicate glass capillaries

“Patch electrodes of 4–7 MΩ were pulled from borosilicate glass capillaries”
patch electrodesName

patch electrodes

“Patch electrodes of 4–7 MΩ were pulled from borosilicate glass capillaries”
internal solutionName

internal solution

“The pipettes were filled with an internal solution containing (in mM): 115 K-gluconate, 25 KCl, 9 NaCl, 10 HEPES, 0.2 EGTA, 1 MgCl2, 3 K2-ATP and 1 Na-GTP, pH 7.2 adjusted with KOH and 280–290 mosmol Kg−1.”
external control solutionName

external control solution

“The control external solution consisted of (in mM): 140 NaCl, 3 KCl, 1 CaCl2 2 MgCl2, 10 glucose and 10 HEPES (pH 7.2).”
recording chamberName

recording chamber

“Slices were transferred to a recording chamber and perfused with oxygenated external control solution.”
fluorescence microscopeName

fluorescence microscopy (Olympus BX50WI)

“fluorescence microscopy (Olympus BX50WI)”
fluorescence microscopeManufacturer

Olympus

“fluorescence microscopy (Olympus BX50WI)”
Imago cameraManufacturer

Till photonics GmbH, Germany

“an Imago camera (both Till photonics GmbH, Germany)”
Imago cameraName

Imago camera

“an Imago camera (both Till photonics GmbH, Germany)”
Imaging Workbench 6.0Name

Imaging Workbench 6.0

“the Imaging Workbench 6.0 software (INDEC BioSystems)”
Imaging Workbench 6.0Manufacturer

INDEC BioSystems

“the Imaging Workbench 6.0 software (INDEC BioSystems)”
Imaging Workbench 6.0Version

6.0

“the Imaging Workbench 6.0 software (INDEC BioSystems)”
heat-closed glass pipetteName

heat-closed glass pipette

“using a heat-closed glass pipette driven by a MM3A-LS piezoelectric micromanipulator”
MM3A-LS piezoelectric micromanipulatorManufacturer

Kleindiek, Reutlingen, Germany

“MM3A-LS piezoelectric micromanipulator (Kleindiek, Reutlingen, Germany)”
MM3A-LS piezoelectric micromanipulatorName

MM3A-LS piezoelectric micromanipulator

“MM3A-LS piezoelectric micromanipulator (Kleindiek, Reutlingen, Germany)”
Piezo2 shRNACatalog number

TR509519

“Cat. No. TR509519: Origene, USA”
Piezo2 shRNAManufacturer

Origene, USA

“Cat. No. TR509519: Origene, USA”
AAV backbone PAM vectorName

AAV backbone of the PAM vector

“adeno-associated viral (AAV) backbone of the PAM vector”
U6 promoterName

U6 promoter

“along with the U6 promoter”
GFP reporter cassetteName

GFP reporter cassette

“The expression of the native GFP reporter cassette in the final clones was confirmed by the strong GFP signal following transfection into HEK-293 cells”
HEK-293 cellsName

HEK-293 cells

“following transfection into HEK-293 cells”
rAAV serotype 2/8 particlesName

rAAV serotype 2/8 particles

“The rAAV serotype 2/8 particles carrying shRNA against Piezo2 (AAV-Piezo2-sh-1) or a scrambled shRNA were generated in house by co-transfecting HEK-293 cells with the cloned rAAV backbone plasmid and the helper 2/8 plasmids”
AAV-Piezo2-sh-1Name

AAV-Piezo2-sh-1

“rAAV serotype 2/8 particles carrying shRNA against Piezo2 (AAV-Piezo2-sh-1)”
scrambled shRNA virusName

scrambled shRNA

“or a scrambled shRNA were generated”
Nanoliter2010Manufacturer

WPI

“nanoliter injector microprocessor (Nanoliter2010, WPI)”
glass micropipetteName

glass micropipette

“The virus was delivered using a glass micropipette”
nanoliter injector microprocessorName

Nanoliter2010

“nanoliter injector microprocessor (Nanoliter2010, WPI)”
Nanoliter2010 injectorManufacturer

WPI

“nanoliter injector microprocessor (Nanoliter2010, WPI)”
AAV-Piezo2-sh-1 injectionVolume

700 nl

“the viral solution was injected in a total volume of 700 nl”
bonewaxName

bonewax

“a layer of adhesive cement (bonewax) was applied around the hole”
cyanocrylateName

cyanocrylate

“We then sutured the skin with a tissue adhesive (cyanocrylate)”
BuprenorphineName

Buprenorphine

“The mice were given 0.1 mg/Kg Buprenorphine as an analgesic”
Buprenorphine administrationDose

0.1 mg/Kg

“The mice were given 0.1 mg/Kg Buprenorphine as an analgesic”
ketamineName

ketamine

“Mice were anesthetized with ketamine (200 mg/ml)”
xylacineName

xylacine

“xylacine (50 mg/ml)”
paraformaldehyde (PFA)Name

paraformaldehyde (PFA)

“perfused with 4% paraformaldehyde (PFA) in 0.1 M phosphate buffer (PB)”
phosphate buffer (PB)Name

phosphate buffer (PB)

“perfused with 4% paraformaldehyde (PFA) in 0.1 M phosphate buffer (PB)”
VT 1000S vibratomeManufacturer

Leica

“VT 1000S, Leica”
blocking solutionName

blocking solution

“incubated for 30 min in blocking solution at room temperature (3% goat serum in TTBS)”
goat serumName

goat serum

“3% goat serum in TTBS”
TTBSName

TTBS

“3% goat serum in TTBS”
PBSName

PBS

“washing three times in PBS (5 min)”
DAPIManufacturer

Life Technology, Carlsbad, USA

“DAPI (2 μM; Life Technology, Carlsbad, USA)”
DAPIName

DAPI

“nuclei were stained with DAPI (2 μM; Life Technology, Carlsbad, USA)”
rabbit anti-Piezo2 antibodyManufacturer

Novus Biological, Littleton, USA

“rabbit anti-Piezo2 (1:100; NBP1-78624, Novus Biological, Littleton, USA)”
rabbit anti-Piezo2 antibodyName

rabbit anti-Piezo2

“rabbit anti-Piezo2 (1:100; NBP1-78624, Novus Biological, Littleton, USA)”
rabbit anti-Piezo2Catalog number

NBP1-78624

“rabbit anti-Piezo2 (1:100; NBP1-78624, Novus Biological, Littleton, USA)”
chicken anti-GFP antibodyManufacturer

Abcam, Cambridge, UK

“chicken anti-GFP (1:1000; AB13970, Abcam, Cambridge, UK)”
chicken anti-GFP antibodyName

chicken anti-GFP

“chicken anti-GFP (1:1000; AB13970, Abcam, Cambridge, UK)”
chicken anti-GFPCatalog number

AB13970

“chicken anti-GFP (1:1000; AB13970, Abcam, Cambridge, UK)”
goat-anti rabbit AlexaFluor-594Name

goat-anti rabbit AlexaFluor-594

“goat-anti rabbit AlexaFluor-594 (1:1000; A11012)”
goat-anti rabbit AlexaFluor-594Catalog number

A11012

“goat-anti rabbit AlexaFluor-594 (1:1000; A11012)”
goat-anti chicken AlexaFluor-488Manufacturer

Life Technology

“goat-anti chicken AlexaFluor-488 (1:2000; A11039, Life Technology)”
goat-anti chicken AlexaFluor-488Name

goat-anti chicken AlexaFluor-488

“goat-anti chicken AlexaFluor-488 (1:2000; A11039, Life Technology)”
goat-anti chicken AlexaFluor-488Catalog number

A11039

“goat-anti chicken AlexaFluor-488 (1:2000; A11039, Life Technology)”
balance beamName

balance beam

“Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top.”
table topName

table top

“beam suspended on two poles 50 cm above a table top”
lampName

lamp

“a lamp above the start point served as an aversive stimulus”
tripodName

tripod

“A video camera on a tripod was used”
video cameraName

video camera

“A video camera on a tripod was used to record the time required to cross the beam.”
metal barName

metal bar

“For two limb hanging we used a 2 mm diameter metal bar mounted between two ring stands 37 cm above a cotton pad”
ring standsName

ring stands

“metal bar mounted between two ring stands”
cotton padName

cotton pad

“cotton pad that was situated under the wire”
rotarodManufacturer

Ugo Basile

“rotarod test (Ugo Basile)”
rotarodName

rotarod

“In the rotarod test (Ugo Basile)”
rotating cylinderName

rotating cylinder

“the mice were placed on a 5 cm diameter rotating cylinder”
CatWalk system 7.1Manufacturer

Noldus Information Technology

“CatWalk system 7.1 (Noldus Information Technology)”
CatWalk system 7.1Name

CatWalk system 7.1

“CatWalk system 7.1 (Noldus Information Technology)”
CatWalk systemVersion

7.1

“CatWalk system 7.1 (Noldus Information Technology)”
glass chamberName

glass chamber

“the mice were placed in a glass chamber (85 cm long and 8.5 cm wide)”
fluorescent lightName

fluorescent light

“Fluorescent light is emitted inside the apparatus”
CatWalk softwareName

CatWalk software

“analyzed with the CatWalk software”
Clampex 10.1Name

Clampex 10.1

“The data were analyzed with the Clampex 10.1 software (Molecular Devices Corp., Sunnyvale, CA, USA)”
Origin 7.5Name

Origin 7.5

“Origin 7.5 (Origin Lab Corporation, Northampton, MA, USA)”
SigmaStatName

SigmaStat

“Statistical analyses were performed with SigmaStat (Systat Software Inc.)”
Procedure (16)
ItemValuePaper’s words
Anesthetize animals for dye injectionAction

animals were anesthetized by isoflurane inhalation

“animals were anesthetized by isoflurane inhalation”
Allow DiI diffusionAction

the DiI was allowed to diffuse retrogradely into the cell bodies in the MTN

“the DiI was allowed to diffuse retrogradely into the cell bodies in the MTN”
Attach brainstem to vibrating slicerAction

The brainstem was attached at its rostral end to the platform of the vibrating slicer (Pelco, TPI, series 1000, St. Louis, USA) and covered with ice-cold ACSF

“The brainstem was attached at its rostral end to the platform of the vibrating slicer (Pelco, TPI, series 1000, St. Louis, USA) and covered with ice-cold ACSF”
Apply mechanical stepsAction

A series of mechanical steps in 1 μm increments were applied every 10 s

“A series of mechanical steps in 1 μm increments were applied every 10 s”
Apply adhesive cement and sutureAction

a layer of adhesive cement (bonewax) was applied around the hole. We then sutured the skin with a tissue adhesive (cyanocrylate)

“a layer of adhesive cement (bonewax) was applied around the hole. We then sutured the skin with a tissue adhesive (cyanocrylate)”
Administer Buprenorphine and recoveryAction

The mice were given 0.1 mg/Kg Buprenorphine as an analgesic and they remained on a heated pad until they recovered from the anesthesia

“The mice were given 0.1 mg/Kg Buprenorphine as an analgesic and they remained on a heated pad until they recovered from the anesthesia”
Anesthetize for perfusionAction

Mice were anesthetized with ketamine (200 mg/ml) and xylacine (50 mg/ml)

“Mice were anesthetized with ketamine (200 mg/ml) and xylacine (50 mg/ml)”
Apply secondary antibodiesAction

the secondary antibodies were applied for 2 h at room temperature

“the secondary antibodies were applied for 2 h at room temperature”
Animal housingParameter

12 h light/dark cycle at 21 °C with food and water available ad libitum

“The animals were housed on a 12 h light/dark cycle at 21 °C with food and water available ad libitum.”
Balance beam testAction

Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top. Food was placed in a box at the finish point to attract the mouse and a lamp above the start point served as an aversive stimulus. A video camera on a tripod was used to record the time required to cross the beam.

“Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top. Food was placed in a box at the finish point to attract the mouse and a lamp above the start point served as an aversive stimulus. A video camera on a tripod was used to record the time required to cross the beam.”
Behavioral test: balance beamAction

Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top

“Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top”
Behavioral test: balance beamParameter

1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top

“Balance was tested on a 1 m long, 2 cm wide beam suspended on two poles 50 cm above a table top”
Behavioral test: CatWalk gait analysisAction

The animal’s gait was tested with the CatWalk system 7.1 (Noldus Information Technology)

“The animal’s gait was tested with the CatWalk system 7.1 (Noldus Information Technology)”
Analyze regularity indexAction

We analyzed the regularity index (%) that expresses the number of normal step sequence patterns relative to the total number of paw placements, a fractional measure of inter-paw coordination

“We analyzed the regularity index (%) that expresses the number of normal step sequence patterns relative to the total number of paw placements, a fractional measure of inter-paw coordination”
Behavioral test scoringAction

The same investigator scored all the tests, each of which was repeated at least three times in each animal, and the values from the individual tracks were averaged.

“The same investigator scored all the tests, each of which was repeated at least three times in each animal, and the values from the individual tracks were averaged.”
Animal habituation and trainingAction

All the animals were habituated and trained in the different tests prior to performing the experiment.

“All the animals were habituated and trained in the different tests prior to performing the experiment.”

Tests in this paper

  • Balance beam test
  • Gait analysis
  • Rotarod test
  • Facts checked by a reviewer

The paper

Species: mice

“Adult C57Bl/6J mice were used in this study”
Read the paper (doi:10.1038/srep25923)Full text on PubMed Central (PMC4869095)

Quotes are shown under the paper’s CC BY license.

How far this was checked

The test records were read three times by AI and checked by code. No person has reviewed them yet.

How records are made